Index

A

AccessorABC (class in skneuromsi.utils.accabc) AlaisBurr2004 (class in skneuromsi.mle._alais_burr2004)

assert_ndresult_allclose() (in module skneuromsi.testing) assert_ndresult_collection_allclose() (in module skneuromsi.testing) astype() (skneuromsi.core.ndresult.result.NDResult method)

B

bias (skneuromsi.ndcollection.bias_acc.NDResultCollectionBiasAcc attribute) (skneuromsi.ndcollection.collection.NDResultCollection property)

bias() (skneuromsi.ndcollection.cplot_acc.NDResultCollectionPlotter method) bias_mean() (skneuromsi.ndcollection.bias_acc.NDResultCollectionBiasAcc method) Bunch (class in skneuromsi.utils.bunch)

C

calculate_causes() (skneuromsi.bayesian._kording2007.Kording2007 method) (skneuromsi.bayesian._zhu2024.Zhu2024 method) (skneuromsi.core.modelabc.SKNMSIMethodABC method) (skneuromsi.neural._cuppini2017.Cuppini2017 method) (skneuromsi.neural._paredes2025.Paredes2025 method) calculate_causes_from_peaks() (in module skneuromsi.utils.readout_tools) calculate_inter_areal_synapses() (in module skneuromsi.utils.neural_tools) calculate_lateral_synapses() (in module skneuromsi.utils.neural_tools) calculate_multiple_peaks_probability() (in module skneuromsi.utils.readout_tools) calculate_neural_distance() (in module skneuromsi.utils.neural_tools) calculate_single_peak_probability() (in module skneuromsi.utils.readout_tools) calculate_spatiotemporal_causes_from_peaks() (in module skneuromsi.utils.readout_tools) calculate_stimuli_input() (in module skneuromsi.utils.neural_tools) causes (skneuromsi.ndcollection.collection.NDResultCollection property) causes_ (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.ndcollection.collection.NDResultCollection property) causes_by_parameter() (skneuromsi.ndcollection.causes_acc.NDResultCollectionCausesAcc method) changing_parameters() (skneuromsi.ndcollection.collection.NDResultCollection method)

coerce_dimension() (skneuromsi.ndcollection.collection.NDResultCollection method) coerce_mode() (skneuromsi.ndcollection.collection.NDResultCollection method) coerce_parameter() (skneuromsi.ndcollection.collection.NDResultCollection method) compress_ndresult() (in module skneuromsi.core.ndresult.compress) compressed_extra_keys (skneuromsi.core.ndresult.compress.CompressedNDResult attribute) compressed_memory_usage (skneuromsi.core.ndresult.compress.CompressedNDResult attribute) CompressedNDResult (class in skneuromsi.core.ndresult.compress) compression_ratio (skneuromsi.core.ndresult.compress.CompressedNDResult property) compute_latency() (in module skneuromsi.utils.neural_tools) CONVERTERS (skneuromsi.utils.custom_json.CustomJSONEncoder attribute) count() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) create_unimodal_stimuli_matrix() (in module skneuromsi.utils.neural_tools) Cuppini2014 (class in skneuromsi.neural._cuppini2014) Cuppini2014Integrator (class in skneuromsi.neural._cuppini2014) Cuppini2014TemporalFilter (class in skneuromsi.neural._cuppini2014) Cuppini2017 (class in skneuromsi.neural._cuppini2017) Cuppini2017Integrator (class in skneuromsi.neural._cuppini2017) CustomJSONEncoder (class in skneuromsi.utils.custom_json)

D

D_MODES (in module skneuromsi.core.constants) D_POSITIONS (in module skneuromsi.core.constants) D_POSITIONS_COORDINATES (in module skneuromsi.core.constants) D_TIMES (in module skneuromsi.core.constants) data (skneuromsi.core.ndresult.compress.CompressedNDResult attribute) decompress_ndresult() (in module skneuromsi.core.ndresult.compress) deep_astype() (in module skneuromsi.utils.ddtype_tools) deep_dtypes() (in module skneuromsi.utils.ddtype_tools) (skneuromsi.core.ndresult.result.NDResult method) default() (skneuromsi.utils.custom_json.CustomJSONEncoder method) DEFAULT_COMPRESSION_PARAMS (in module skneuromsi.core.ndresult.compress) DEFAULT_RANGE (in module skneuromsi.sweep) describe() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method)

describe_causes() (skneuromsi.ndcollection.causes_acc.NDResultCollectionCausesAcc method) dict_allclose() (in module skneuromsi.utils.dict_cmp) DIMENSIONS (in module skneuromsi.core.constants) dimmax() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) dimmin() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) dims (skneuromsi.core.ndresult.result.NDResult property) dims_ (skneuromsi.ndcollection.collection.NDResultCollection property) disparity_matrix() (skneuromsi.ndcollection.collection.NDResultCollection method) doc_inherit() (in module skneuromsi.utils.doctools) doc_pattern (skneuromsi.core.modelabc.ParameterAliasTemplate attribute) dtypes() (skneuromsi.core.ndresult.result.NDResult method) dump() (in module skneuromsi.utils.custom_json) dumps() (in module skneuromsi.utils.custom_json)

E

e_ (skneuromsi.core.ndresult.result.NDResult property)

expected_result_length_ (skneuromsi.sweep.ParameterSweep property) extra_ (skneuromsi.core.ndresult.result.NDResult property)

F

from_method_class() (skneuromsi.core.modelabc.SKNMSIRunConfig class method)

from_modes_dict() (skneuromsi.core.ndresult.result.NDResult class method) from_ndresults() (skneuromsi.ndcollection.collection.NDResultCollection class method)

G

get_model_state() (skneuromsi.core.modelabc.SKNMSIRunConfig method) get_modes() (skneuromsi.core.ndresult.result.NDResult method) get_pcoords() (skneuromsi.core.ndresult.result.NDResult method)

get_positions() (skneuromsi.core.ndresult.result.NDResult method) get_positions_coordinates() (skneuromsi.core.ndresult.result.NDResult method) get_times() (skneuromsi.core.ndresult.result.NDResult method)

I

input_computation() (skneuromsi.bayesian._kording2007.Kording2007 method) (skneuromsi.bayesian._zhu2024.Zhu2024 method) input_modes_ (skneuromsi.ndcollection.collection.NDResultCollection property)

input_targets (skneuromsi.core.modelabc.SKNMSIRunConfig property) is_astypeable() (in module skneuromsi.utils.ddtype_tools) is_class_astypeable() (in module skneuromsi.utils.ddtype_tools)

K

Kording2007 (class in skneuromsi.bayesian._kording2007)

L

line_positions() (skneuromsi.core.ndresult.plot_acc.ResultPlotter method) line_times() (skneuromsi.core.ndresult.plot_acc.ResultPlotter method) linep() (skneuromsi.core.ndresult.plot_acc.ResultPlotter method)

linet() (skneuromsi.core.ndresult.plot_acc.ResultPlotter method) load() (in module skneuromsi.utils.custom_json) loads() (in module skneuromsi.utils.custom_json)

M

make_run_input_alias_map() (skneuromsi.core.modelabc.SKNMSIRunConfig method) make_run_output_alias_map() (skneuromsi.core.modelabc.SKNMSIRunConfig method) map() (skneuromsi.sweep.NDCollectionProcessingStrategy method) (skneuromsi.sweep.ProcessingStrategyABC method) max() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) MaybeTooBigForAvailableMemoryWarning mean() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) mean_report() (skneuromsi.ndcollection.causes_acc.NDResultCollectionCausesAcc method) (skneuromsi.ndcollection.cplot_acc.NDResultCollectionPlotter method) mem_error_ratio (skneuromsi.sweep.ParameterSweep property) mem_warning_ratio (skneuromsi.sweep.ParameterSweep property) memory_impact() (in module skneuromsi.utils.memtools) memory_usage() (in module skneuromsi.utils.memtools) min() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) mname (skneuromsi.core.ndresult.result.NDResult property) mode0 (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property) mode1 (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property) model (skneuromsi.sweep.ParameterSweep property) modes_ (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.ndcollection.collection.NDResultCollection property) modes_to_data_array() (in module skneuromsi.core.ndresult.result) modes_variance_sum() (skneuromsi.ndcollection.collection.NDResultCollection method) module skneuromsi skneuromsi.bayesian skneuromsi.bayesian._kording2007 skneuromsi.bayesian._zhu2024 skneuromsi.core skneuromsi.core.constants skneuromsi.core.modelabc skneuromsi.core.ndresult skneuromsi.core.ndresult.compress skneuromsi.core.ndresult.plot_acc skneuromsi.core.ndresult.result skneuromsi.core.ndresult.stats_acc skneuromsi.io skneuromsi.mle skneuromsi.mle._alais_burr2004 skneuromsi.ndcollection skneuromsi.ndcollection.bias_acc skneuromsi.ndcollection.causes_acc skneuromsi.ndcollection.collection skneuromsi.ndcollection.cplot_acc skneuromsi.neural skneuromsi.neural._cuppini2014 skneuromsi.neural._cuppini2017 skneuromsi.neural._paredes2025 skneuromsi.sweep skneuromsi.testing skneuromsi.utils skneuromsi.utils.accabc skneuromsi.utils.bunch skneuromsi.utils.custom_json skneuromsi.utils.ddtype_tools skneuromsi.utils.dict_cmp skneuromsi.utils.doctools skneuromsi.utils.memtools skneuromsi.utils.neural_tools skneuromsi.utils.readout_tools

mtype (skneuromsi.core.ndresult.result.NDResult property) multiple_dtype() (in module skneuromsi.utils.ddtype_tools) multiple_dtype_class() (in module skneuromsi.utils.ddtype_tools) multisensory_estimator() (skneuromsi.bayesian._kording2007.Kording2007 method) (skneuromsi.bayesian._zhu2024.Zhu2024 method) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 method)

N

n (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) n_jobs (skneuromsi.sweep.ParameterSweep property) n_report() (skneuromsi.ndcollection.causes_acc.NDResultCollectionCausesAcc method) (skneuromsi.ndcollection.cplot_acc.NDResultCollectionPlotter method) NAME (in module skneuromsi.core.constants) name (skneuromsi.ndcollection.collection.NDResultCollection property) (skneuromsi.neural._cuppini2014.Cuppini2014Integrator attribute) (skneuromsi.neural._cuppini2014.Cuppini2014TemporalFilter attribute) (skneuromsi.neural._cuppini2017.Cuppini2017Integrator attribute) (skneuromsi.neural._paredes2025.Paredes2025Integrator attribute) (skneuromsi.neural._paredes2025.Paredes2025TemporalFilter attribute)

NDCollectionProcessingStrategy (class in skneuromsi.sweep) NDResult (class in skneuromsi.core.ndresult.result) NDResultCollection (class in skneuromsi.ndcollection.collection) NDResultCollectionBiasAcc (class in skneuromsi.ndcollection.bias_acc) NDResultCollectionCausesAcc (class in skneuromsi.ndcollection.causes_acc) NDResultCollectionPlotter (class in skneuromsi.ndcollection.cplot_acc) neurons (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property) nmap_ (skneuromsi.core.ndresult.result.NDResult property) numerosity_range (skneuromsi.bayesian._zhu2024.Zhu2024 property) numerosity_res (skneuromsi.bayesian._zhu2024.Zhu2024 property)

O

open_ndresult() (in module skneuromsi.io) open_ndresults_collection() (in module skneuromsi.io) original_memory_usage (skneuromsi.core.ndresult.compress.CompressedNDResult attribute)

output_mode (skneuromsi.core.ndresult.result.NDResult property) output_mode_ (skneuromsi.ndcollection.collection.NDResultCollection property) output_targets (skneuromsi.core.modelabc.SKNMSIRunConfig property)

P

ParameterAliasTemplate (class in skneuromsi.core.modelabc) ParameterSweep (class in skneuromsi.sweep) Paredes2025 (class in skneuromsi.neural._paredes2025) Paredes2025Integrator (class in skneuromsi.neural._paredes2025) Paredes2025TemporalFilter (class in skneuromsi.neural._paredes2025) pcoords_ (skneuromsi.core.ndresult.result.NDResult property) plot (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.ndcollection.collection.NDResultCollection property) position_range (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property)

position_res (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property) positions_ (skneuromsi.core.ndresult.result.NDResult property) positions_coordinates_ (skneuromsi.core.ndresult.result.NDResult property) processing_strategy (skneuromsi.sweep.ParameterSweep property) ProcessingStrategyABC (class in skneuromsi.sweep) prune_synapses() (in module skneuromsi.utils.neural_tools)

Q

quantile() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method)

R

random (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property) random_ (skneuromsi.sweep.ParameterSweep property) range (skneuromsi.sweep.ParameterSweep property) read_ndc() (in module skneuromsi.io) read_ndr() (in module skneuromsi.io) reduce() (skneuromsi.sweep.NDCollectionProcessingStrategy method) (skneuromsi.sweep.ProcessingStrategyABC method) render() (skneuromsi.core.modelabc.ParameterAliasTemplate method) repeat (skneuromsi.sweep.ParameterSweep property)

ResultPlotter (class in skneuromsi.core.ndresult.plot_acc) ResultStatsAccessor (class in skneuromsi.core.ndresult.stats_acc) rp (skneuromsi.core.ndresult.result.NDResult property) run() (skneuromsi.bayesian._kording2007.Kording2007 method) (skneuromsi.bayesian._zhu2024.Zhu2024 method) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 method) (skneuromsi.neural._cuppini2014.Cuppini2014 method) (skneuromsi.neural._cuppini2017.Cuppini2017 method) (skneuromsi.neural._paredes2025.Paredes2025 method) (skneuromsi.sweep.ParameterSweep method) run_parameters (skneuromsi.core.ndresult.result.NDResult property) run_parameters_ (skneuromsi.ndcollection.collection.NDResultCollection property) run_parameters_values (skneuromsi.ndcollection.collection.NDResultCollection property)

S

s (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2014.Cuppini2014Integrator attribute) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._cuppini2017.Cuppini2017Integrator attribute) (skneuromsi.neural._paredes2025.Paredes2025 property) (skneuromsi.neural._paredes2025.Paredes2025Integrator attribute) set_model_state() (skneuromsi.core.modelabc.SKNMSIRunConfig method) set_random() (skneuromsi.bayesian._kording2007.Kording2007 method) (skneuromsi.bayesian._zhu2024.Zhu2024 method) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 method) (skneuromsi.neural._cuppini2014.Cuppini2014 method) (skneuromsi.neural._cuppini2017.Cuppini2017 method) (skneuromsi.neural._paredes2025.Paredes2025 method) sigmoid() (skneuromsi.neural._cuppini2014.Cuppini2014Integrator method) (skneuromsi.neural._cuppini2017.Cuppini2017Integrator method) (skneuromsi.neural._paredes2025.Paredes2025Integrator method) single_dtype() (in module skneuromsi.utils.ddtype_tools) single_dtype_class() (in module skneuromsi.utils.ddtype_tools) skneuromsi module skneuromsi.bayesian module skneuromsi.bayesian._kording2007 module skneuromsi.bayesian._zhu2024 module skneuromsi.core module skneuromsi.core.constants module skneuromsi.core.modelabc module skneuromsi.core.ndresult module skneuromsi.core.ndresult.compress module skneuromsi.core.ndresult.plot_acc module skneuromsi.core.ndresult.result module skneuromsi.core.ndresult.stats_acc module skneuromsi.io module skneuromsi.mle module skneuromsi.mle._alais_burr2004 module

skneuromsi.ndcollection module skneuromsi.ndcollection.bias_acc module skneuromsi.ndcollection.causes_acc module skneuromsi.ndcollection.collection module skneuromsi.ndcollection.cplot_acc module skneuromsi.neural module skneuromsi.neural._cuppini2014 module skneuromsi.neural._cuppini2017 module skneuromsi.neural._paredes2025 module skneuromsi.sweep module skneuromsi.testing module skneuromsi.utils module skneuromsi.utils.accabc module skneuromsi.utils.bunch module skneuromsi.utils.custom_json module skneuromsi.utils.ddtype_tools module skneuromsi.utils.dict_cmp module skneuromsi.utils.doctools module skneuromsi.utils.memtools module skneuromsi.utils.neural_tools module skneuromsi.utils.readout_tools module SKNMSIMethodABC (class in skneuromsi.core.modelabc) SKNMSIRunConfig (class in skneuromsi.core.modelabc) stats (skneuromsi.core.ndresult.result.NDResult property) std() (skneuromsi.core.ndresult.stats_acc.ResultStatsAccessor method) store_ndresult() (in module skneuromsi.io) store_ndresults_collection() (in module skneuromsi.io)

T

target (skneuromsi.core.modelabc.ParameterAliasTemplate attribute) (skneuromsi.sweep.ParameterSweep property) tau (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2014.Cuppini2014Integrator attribute) (skneuromsi.neural._cuppini2014.Cuppini2014TemporalFilter attribute) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._cuppini2017.Cuppini2017Integrator attribute) (skneuromsi.neural._paredes2025.Paredes2025 property) (skneuromsi.neural._paredes2025.Paredes2025Integrator attribute) (skneuromsi.neural._paredes2025.Paredes2025TemporalFilter attribute) tau_neurons (skneuromsi.neural._paredes2025.Paredes2025 property) template (skneuromsi.core.modelabc.ParameterAliasTemplate attribute) template_variables (skneuromsi.core.modelabc.ParameterAliasTemplate property) (skneuromsi.core.modelabc.SKNMSIRunConfig property) theta (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2014.Cuppini2014Integrator attribute) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._cuppini2017.Cuppini2017Integrator attribute) (skneuromsi.neural._paredes2025.Paredes2025 property) (skneuromsi.neural._paredes2025.Paredes2025Integrator attribute) time_range (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property)

time_res (skneuromsi.bayesian._kording2007.Kording2007 property) (skneuromsi.bayesian._zhu2024.Zhu2024 property) (skneuromsi.core.ndresult.result.NDResult property) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 property) (skneuromsi.neural._cuppini2014.Cuppini2014 property) (skneuromsi.neural._cuppini2017.Cuppini2017 property) (skneuromsi.neural._paredes2025.Paredes2025 property) times_ (skneuromsi.core.ndresult.result.NDResult property) to_dict() (skneuromsi.core.ndresult.result.NDResult method) (skneuromsi.utils.bunch.Bunch method) to_ndc() (in module skneuromsi.io) (skneuromsi.ndcollection.collection.NDResultCollection method) to_ndr() (in module skneuromsi.io) (skneuromsi.core.ndresult.result.NDResult method) to_xarray() (skneuromsi.core.ndresult.result.NDResult method) ToBigForAvailableMemoryError tqdm_cls (skneuromsi.ndcollection.collection.NDResultCollection property) (skneuromsi.sweep.ParameterSweep property)

U

unique_causes() (skneuromsi.ndcollection.causes_acc.NDResultCollectionCausesAcc method) unisensory_estimator() (skneuromsi.bayesian._kording2007.Kording2007 method) (skneuromsi.bayesian._zhu2024.Zhu2024 method) (skneuromsi.mle._alais_burr2004.AlaisBurr2004 method)

unity_report() (skneuromsi.ndcollection.causes_acc.NDResultCollectionCausesAcc method) (skneuromsi.ndcollection.cplot_acc.NDResultCollectionPlotter method)

V

validate_compression_params() (in module skneuromsi.core.ndresult.compress)

validate_init_and_run() (skneuromsi.core.modelabc.SKNMSIRunConfig method) VERSION (in module skneuromsi.core.constants)

W

weight_calculator() (skneuromsi.mle._alais_burr2004.AlaisBurr2004 method)

wrap_init() (skneuromsi.core.modelabc.SKNMSIRunConfig method) wrap_run() (skneuromsi.core.modelabc.SKNMSIRunConfig method)

X

XA_NAME (in module skneuromsi.core.constants)

Z

Zhu2024 (class in skneuromsi.bayesian._zhu2024)